PhytophthoraV1, Main, Exploration, bibRecord, 001231

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

Identifieur interne : 001231 ( Main/Exploration ); précédent : 001230; suivant : 001232

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

Auteurs : Michael D. Martin [Danemark] ; Enrico Cappellini ; Jose A. Samaniego ; M Lisandra Zepeda ; Paula F. Campos ; Andaine Seguin-Orlando ; Nathan Wales ; Ludovic Orlando ; Simon Y W. Ho ; Fred S. Dietrich ; Piotr A. Mieczkowski ; Joseph Heitman ; Eske Willerslev ; Anders Krogh ; Jean B. Ristaino ; M Thomas P. Gilbert

Source :

Nature communications [ 2041-1723 ] ; 2013.

RBID : pubmed:23863894

Descripteurs français

KwdFr :
- Génome fongique (MeSH), Génotype (MeSH), Histoire du 19ème siècle (MeSH), Humains (MeSH), Inanition (histoire), Inanition (microbiologie), Irlande (MeSH), Maladies des plantes (histoire), Maladies des plantes (microbiologie), Phylogenèse (MeSH), Phytophthora infestans (classification), Phytophthora infestans (génétique), Phytophthora infestans (pathogénicité), Phénotype (MeSH), Solanum tuberosum (microbiologie), Séquençage nucléotidique à haut débit (MeSH), Virulence (MeSH), Évolution moléculaire (MeSH).
MESH :
- génétique : Phytophthora infestans.
- histoire : Inanition, Maladies des plantes.
- microbiologie : Inanition, Maladies des plantes, Solanum tuberosum.
- pathogénicité : Phytophthora infestans.
- Génome fongique, Génotype, Histoire du 19ème siècle, Humains, Irlande, Phylogenèse, Phytophthora infestans, Phénotype, Séquençage nucléotidique à haut débit, Virulence, Évolution moléculaire.

English descriptors

KwdEn :
- Evolution, Molecular (MeSH), Genome, Fungal (MeSH), Genotype (MeSH), High-Throughput Nucleotide Sequencing (MeSH), History, 19th Century (MeSH), Humans (MeSH), Ireland (MeSH), Phenotype (MeSH), Phylogeny (MeSH), Phytophthora infestans (classification), Phytophthora infestans (genetics), Phytophthora infestans (pathogenicity), Plant Diseases (history), Plant Diseases (microbiology), Solanum tuberosum (microbiology), Starvation (history), Starvation (microbiology), Virulence (MeSH).
MESH :
- geographic : Ireland.
- classification : Phytophthora infestans.
- genetics : Phytophthora infestans.
- history : Plant Diseases, Starvation.
- microbiology : Plant Diseases, Solanum tuberosum, Starvation.
- pathogenicity : Phytophthora infestans.
- Evolution, Molecular, Genome, Fungal, Genotype, High-Throughput Nucleotide Sequencing, History, 19th Century, Humans, Phenotype, Phylogeny, Virulence.

Abstract

Responsible for the Irish potato famine of 1845-49, the oomycete pathogen Phytophthora infestans caused persistent, devastating outbreaks of potato late blight across Europe in the 19th century. Despite continued interest in the history and spread of the pathogen, the genome of the famine-era strain remains entirely unknown. Here we characterize temporal genomic changes in introduced P. infestans. We shotgun sequence five 19th-century European strains from archival herbarium samples--including the oldest known European specimen, collected in 1845 from the first reported source of introduction. We then compare their genomes to those of extant isolates. We report multiple distinct genotypes in historical Europe and a suite of infection-related genes different from modern strains. At virulence-related loci, several now-ubiquitous genotypes were absent from the historical gene pool. At least one of these genotypes encodes a virulent phenotype in modern strains, which helps explain the 20th century's episodic replacements of European P. infestans lineages.

DOI: 10.1038/ncomms3172
PubMed: 23863894
PubMed Central: PMC3759036

Affiliations:

Danemark

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001251
to stream Main, to step Curation: 001251

Le document en format XML

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<front><div type="abstract" xml:lang="en">Responsible for the Irish potato famine of 1845-49, the oomycete pathogen Phytophthora infestans caused persistent, devastating outbreaks of potato late blight across Europe in the 19th century. Despite continued interest in the history and spread of the pathogen, the genome of the famine-era strain remains entirely unknown. Here we characterize temporal genomic changes in introduced P. infestans. We shotgun sequence five 19th-century European strains from archival herbarium samples--including the oldest known European specimen, collected in 1845 from the first reported source of introduction. We then compare their genomes to those of extant isolates. We report multiple distinct genotypes in historical Europe and a suite of infection-related genes different from modern strains. At virulence-related loci, several now-ubiquitous genotypes were absent from the historical gene pool. At least one of these genotypes encodes a virulent phenotype in modern strains, which helps explain the 20th century's episodic replacements of European P. infestans lineages.</div>
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<Abstract><AbstractText>Responsible for the Irish potato famine of 1845-49, the oomycete pathogen Phytophthora infestans caused persistent, devastating outbreaks of potato late blight across Europe in the 19th century. Despite continued interest in the history and spread of the pathogen, the genome of the famine-era strain remains entirely unknown. Here we characterize temporal genomic changes in introduced P. infestans. We shotgun sequence five 19th-century European strains from archival herbarium samples--including the oldest known European specimen, collected in 1845 from the first reported source of introduction. We then compare their genomes to those of extant isolates. We report multiple distinct genotypes in historical Europe and a suite of infection-related genes different from modern strains. At virulence-related loci, several now-ubiquitous genotypes were absent from the historical gene pool. At least one of these genotypes encodes a virulent phenotype in modern strains, which helps explain the 20th century's episodic replacements of European P. infestans lineages.</AbstractText>
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Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

Reconstructing genome evolution in historic samples of the Irish potato famine pathogen.

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